2016-10-31

NCAR RDA outage Nov 1, 2016

UPDATE Nov 1 15:11:39 MDT 2016: All RDA services are back in service. Thank you for your patience.

NCAR CISL central file disk systems will be down for system maintenance from 8:00 MDT on Tuesday, November 1, 2016 for approximately 4 hours.

All data downloads, including access through THREDDS servers, will be unavailable during this outage.

NCAR CISL supercomputers will be down for system maintenance from 8:00 MDT on Tuesday, November 1, 2016 for approximately 8 hours.

Custom data orders will be held and automatically restarted after the work is complete.

Change notice from the Daily B:
The Yellowstone, Geyser, and Caldera clusters will be unavailable from 8 a.m. to 6 p.m. MDT Tuesday, November 1, to allow CISL staff to apply a critical security patch. The GLADE file systems will be unavailable from 8 a.m. to noon.

A system reservation will be put in place 12 hours before the scheduled downtime. Users’ jobs with specified job times that overlap the reservation period will remain on hold until the system is restored to service. Running jobs that have not finished by 8 a.m. Tuesday will be killed and will need to be resubmitted after the maintenance period.

We apologize for any inconvenience this might cause. Users will be informed via the CISL Notifier service when the systems are returned to production.

2016-10-28

How to work around operational changes to GFS/GDAS/FNL

Operational models are moving targets.
Any changes in software for an operational analysis can result in spurious signals or shifts. Operational systems' software is frequently changed as they uncover bugs or biases and fix them; code segments are improved to better represent atmospheric phenomena. The changes are usually not announced ahead of time. The change log may be difficult for the non-expert user to decipher. Thus, operational analyses are not appropriate for compiling a long time series to study changes over time, e.g. to look for climate signals.
A handful of users in the last week have contacted rdahelp@ucar.edu about problems initializing WRF with FNL data spanning 2016-05-11. Why does WPS, the WRF Preprocessing System, crash right at this juncture?

The answer lies in the operational changes made to the GFS/GDAS system at NOAA NCEP. You can view the full list of changes to GFS/GDAS since 1991 including the announcement of the changes effective 2016-05-11 at 12 UTC.
- Addition of five layers in the upper stratosphere in gridded output
This change affects ds084.1 NCEP GFS 0.25 Degree, ds083.2 NCEP FNL 1.0 Degreeds083.3 NCEP FNL 0.25 Degree and ds335.0 Historical Unidata Internet Data Distribution (IDD) Gridded Model Data.

The first thing to do when things break is to examine your data. You can use wgrib2, or take a close look at the metadata for your input data set, as I've shown earlier, in WRF Vtable Carpentry.

Scroll down to the "Vertical Levels" section of the data set information page and click on "detailed metadata."

You will see that six parameters (HGT, TMP, RH, UGRD, VGRD, 03MR), many used by WRF, received five additional levels (1, 2, 3, 5, 7 mb) beginning 2016-05-11 at 12 UTC.


These changes do not affect the performance of ungrib.exe, but they may impact real.exe and wrf.exe.

The RDA team (rdahelp@ucar.edu) helps our data users with WRF WPS up to providing an accurate Vtable that describes the data obtained from us. The WRF team (wrfhelp@ucar.edu) picks up support from there. This problem spans both support groups.

I contacted WRF to coordinate our help and I am posting information beyond RDA's normal scope here as a service to our users so that all the information to get unstuck resides in one place.

First, you can work around the problem by removing the new vertical levels in the files after the GFS/GDAS change.  Then all of your WPS input will be consistent.  You can do this yourself with wgrib2, or our "Get a Subset" tool.

UPDATE Nov 18, 2016
The following method, provided by wrfhelp, does not work. You need to use the first method above. For details on how to achieve this using wgrib2, read GRIB2 file carpentry.

If you want to use all of the available data in a WRF run that spans a discontinuity of data:
  1. Run ungrib.exe as usual
  2. Using a namelist that accurately describes the number of vertical levels found in the input GRIB2 files before the change (27 in this case), run metgrid.exe and real.exe for the times before the change.
  3. Edit your namelist to the new number of vertical levels (32) and then run metgrid.exe and real.exe on the remainder of the GRIB2 input files for the period after the change.
  4. This generates a complete set of wrfbdy and wrfinput files for your entire WRF run.
  5. Run wrf.exe up until the discontinuity with 27 in the namelist.  
  6. Then edit the namelist for 32 vertical levels and restart wrf.exe for the remainder of the run.
Pat yourself on the back. You've just completed numerical integration of a complex system of differential equations around a discontinuity. ;-)

2016-10-18

Trip Report: Rocky Mountain Celebration of Women in Computing 2016

Last month, I attended Rocky Mountain Celebration of Women in Computing 2016 (RMCWiC) along with Dr Natasha Flyer and (soon-to-be Dr) Delilah Feng.  The 280+ registered attendees (including over 160 college students) overwhelmed the Hotel RL in downtown Salt Lake City.

Can you find the NCAR CISL representatives in this photo?
The Rocky Mountain Celebration of Women in Computing, an ACM (Association for Computing Machinery) Celebration event, is the biennial event for the Rocky Mountain Region that encourages the career interests of women in computing...
NCAR's Computational Information Systems Laboratory (CISL) jointly sponsors RMCWiC and we actively recruit visiting students and scientists at these meetings.

My favorite part was the poster session, where students presented their work.  The breadth, quality of work and enthusiasm were very high.  I enjoyed talking to the students so much, they ran out of dessert before I remembered they were serving it!
A very lively poster session.
Computing is very broad; even the work within CISL is very broad.  I lingered longest at the talks featuring embedded sensors, real-time data processing and data visualization.  When one student told me she was ready to tackle higher dimensional data problems, I was thrilled.
This student presented data visualization research about how to effectively convey uncertainty, a subject of high importance in meteorology and climatology.
If you are a student or recent PhD, consider applying to one of NCAR CISL's visitor programs.  We are particularly interested in hosting undergraduate and graduate students for our Summer Internships in Parallel Computational Science (SIParCS) program.  These summer internships pay local living expenses and cash stipends.  Furthermore, SIParCS students work with one or more mentors throughout their stay and may be awarded travel stipends to present their SIParCS work at conferences such as AGU and AMS.

I worked part-time or was a stay-at-home mom for many years before re-entering the scientific computing workforce.  Career re-entry candidates are also encouraged to apply.  Feel free to contact me about career re-entry opportunities offered by NSF, NASA and other government agencies.